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What non-chemical mutagenic agents exist? - ANSWER-UV
radiation
-Pyrimidines and Purines absorb max at 254 nm
-Max. mutation at 254nm
-UV "excites" bases causing pyrimidine dimers and pyrimidine
hydrates
What is the mechanism of DNA recombination? - ANSWER-
•Recombination of
homologous
chromosomes
-Crossing over during prophase of the first
meiotic division
•A number of repair enzymes
involved
-E. coli Rec genes
involved
•Cleave single
strand
,•Helicase
activity
•Promote single strand
exchange
•DNA
ligase
How do defects in DNA repair contribute to human disease? -
ANSWER-
•Repair systems essential
•Numerous disease associated with defective DNA repair
•Xeroderma pigmentosum (XP)
-1/250,000; autosomal recessive
•Phenotype: extreme sensitivity to sunlight, intense freckling,
skin cancer -Results from defects in nine different genes
•Six of these nine involved nucleotide excision repair,
specifically exinuclease activity
Human Diseases with defects in repair - ANSWER-
•Cockayne Syndrome
-Defects in nucleotide excision
repair
-Retarded growth, diminished mental
skills
-No increase in skin
cancer
•Trichothiodystrophy
-Defects in nucleotide excision repair
-Short stature, brittle hair, scaly scalp, diminished mental skills
,•Others
-Ataxia telanglectasica
-Fanconi Anemia
Bloom Syndrome
DNA polymerase1 not required for growth - ANSWER-
mutant of pol A
- lacks 5' to 3' polymerase
activity
ecoli still viable, DNA pol not responsible for
replication of E coli
sensitive to UV
light
DNA ligase - ANSWER-catalyzes the covalent closure of
nicks in DNA link okazaki fragments requires ATP or
NAD
doesnt fill gaps where bases are missing
priming new DNA synthesis - ANSWER-can be
random DNA enzyme can produce DNA primer
enzyme could produce RNA primer RNA
polymerase doesnt require primers
DNA primase requires inly a DNA template
unwinding DNA - ANSWER-DNA helicase unwinds DNA using
ATP
DNA must be rotated 360 for every 10 bp
helicases possess 6 subunits
, - produce two single strand of DNA to be replicated
single stran DNA binding protien keeps single strand of DNA
extends
Supercoiling - ANSWER-positive-
overwound tight DNA
negative- unwound
relaxed DNA
topoisimerases- 1
and2
Topoisomerases - ANSWER-All living things have
topoisomerases
Type 1 does single stranded breaks and rotates the DNA to
relieve tension Type 2 (ex. DNA gyrase) breaks both strands
and rotates the DNA to relieve tension (transient and stable
process), takes overwound supercoils and loops it through one
of the breaks
Base Excision Repair - ANSWER-•Prokaryotes and
Eukaryotes
•Removes abnormal or chemically
modified bases
•Specific glycosylases recognize specific
base alterations
1.Glycosylases mediated base removal (AP
site created)
2.AP endonuclease removes
backbone