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Thesis

Karyotyping in Primates and Equids

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It is a Master level thesis of Genetics in which karyotyping is done for 8 species of primates and 3 species of equids and their comparison.

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Karyotype evolution can be reassembled by the depiction of chromosome morphology. It is

based on the location of the centromere. Speciation events are usually accompanied by a change

in karyotypes. The great ape phylogeny and the origins of most of the ancient and current

primates have been problematic to discuss as the sampling procedure in ancient fossils taxa is

incomplete. The basic reason for strife is associated with discordance in fossil and molecular

estimates.

Aims

The basic aim of the project is to estimate the relative rates of neo centromere formation in great

apes to identify the cause of differences.

Objectives

The objectives of this project are listed:

 To define the great ape phylogenetic tree with dates.

 To determine the molecular process and karyotypic process

 To teat idea that rate of karyotypic change is contrariwise related to the degree of post-

copulatory secure selection.

Research Project

The basic aim of the proposed study is to define and discuss the karyotype evolution in great ape

lineages as well as to report the rate for some elementary processes if possible. These processes

may include centromere loss or the formation of new centromere, loss of chromosomes by the

process of chromosome fusion, formation of new chromosomes by the process of chromosome

fission and some other alike processes.

,According to paleontological data, there were no crown-primates about 56 Ma ago. But

according to studies made on the basis of molecular data, the origin of crown primates has been

extended in the Cretaceous period. Crown primates can be defined as the group of primates

having all descendants, extinct or alive, of the last common ancestor of living primates.

According to some research studies based on inclusive mito-genomic observations of primates,

genomes of mitochondria from different mammalian species including primates, it was

confirmed that monophyly is present in all primate clades (Glazko & Nei, 2003). Their

phylogenetic analysis sustenance a robust topology. Great apes belong to the family Hominidae

which has 4 existing genera. These are Pongo, which includes Bornean and Sumatran

orangutans; Gorilla, which includes gorillas (both eastern and western); Pan, which includes

bonobos and chimpanzees and Homo, which includes Humans. From all these mentioned, Pan

and Gorillas, known as Africa's great apes, are the closest living relatives of humans due to

similarity in genes and genetic makeup. A basic need and main focus of biological anthropology

are to conjecture the exact evolutionary relationships that humans share with non-human

primates. It also deals with the phylogenetic relations of different primate clades (Siepel, 2009).

The basic aim is to observe the fact that how the process of evolution is different in apes and

eventually, to comprehend the exclusive variations that make humans different from other

primates. Different studies have been made and many types of analytical data are there to answer

these research questions and objectives. This analytical data includes genetic data, ecological and

behavioral data, morphological data, etc. In the 20th century, there was an outburst in the research

field of genetic study based on DNA sequences. This explosion changed our understanding of

the evolutionary history of apes and humans. These research studies also upraised some more

,research questions such as how evolutionary processes differ in the species and which of these

processes produced the diversity which is present in the great apes' species (Pozzi et al., 2014)

The diversity produced, can result in species trees and gene trees. These trees depict the

phylogenetic relations and present the evolution as well as divergence dates of several new

species og great apes.




For the last few decades, there was a great work made on phylogenetic relations of human and

non-human primates. Genetic evidence has established that humans are more closely related to

(Pan troglodytes) and Pan paniscus (chimpanzee and bonobos respectively) than with Gorilla

gorilla (Gorillas). Bonobos and chimpanzees share 99% of their genome with that of humans.

Data was collected and analyzed in the regions of the genome that can be compared and aligned

directly. After bonobos and chimpanzees, gorillas come at second, sharing 98% of their genome

(Morris Goodman & Sternera, 2010). Orangutans share 97% of their genome with humans. The

, lineage finally lead to modern humans separated from lineages leading to the orangutans about

10 to 17 MYA and from lineages leading to gorillas about 8.5 to 12 MYA. About 5.5 to 7 MYA,

the lineage finally lead to the separation of modern humans from the lineages of chimpanzees

and bonobos (Perelman et al., 2011). A detailed comparison of the complete genome of primate

species has been completed in recent years. Research suggests that the process of speciation

(human separation from bonobo, chimpanzee and gorilla) was very complex. Another fact is, the

event of separation of these lineages was very close in time and was difficult to untangle.

Predominantly, the genealogical relations of apes with humans vary across the genome (Prado-

Martinez et al., 2013). The genomic comparison of the gorilla with chimpanzees and humans

proposed that across 15% of their genome, gorillas share a close relation with chimpanzees and

humans. About 1 to 1.5 MYA, a single common ancestor was shared by bonobos and

chimpanzees. According to this fact, the genome of bonobos and chimpanzees should be distant

similarly from humans (McNulty, 2016).

With the advancement in genetics, features of characteristics evolution and functional genetics

create a focal point of human-genome comparative research. Also, the research on primate

phylogenetic relations gained a huge interest in the field of evolutionary biology. The molecular

side and researches made on genomics of primates, provides a clearer picture and clarifies the

classification of Hominoidea. Goodman and co-workers discussed claasification of Hominoidea.

It is reported that, the DNA and protein signals divide “Hominoidea” into Hominidae and

Hylobatidae, and Hominidae into Ponginae and Homininae. Furthermore, Homininae is divided

into Pan plus Gorilla and Homo. This systemic has some molecular bases. Maximum likelihood

analysis as well as Parsimony which is conceded out on orthologous non-coding nucleotide

sequences taken from primate β-globin gene cluster, gives stronger evidence for the chimpanzee-

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Uploaded on
October 23, 2024
Number of pages
45
Written in
2019/2020
Type
THESIS
Supervisor(s)
Muhammad sajjad
Year
Unknown

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