Gene of interest: AT5G45210
Conduct bioinformatics analysis on a gene of your interest in A. thaliana. The analysis
must contain:
1. The available full DNA sequence of the gene (https://bar.utoronto.ca/eplant/)
>AT5G45210 Chr5:18295437-18298642
atgaatatttacatttatgggacccacatgtttgtatacttatatcacaagcacagaaaatacaagaaaaaagtaagaaaatcaATGGCGACTTCAAAGGCGGATGAAGTAT
TTATCGACTTCAGTGGAATCGAAACGCGCAATTCTTTTGTGAGTCATCTCTCGGCCGCTTTCCGCCGCAGGAGTGTTTCCGTTTGC
CTTGGTGGAGACTGCACTGACGTGGTGACGCCGCGGAAAACCAATGAAGGGTGTAAAGTCTTTGTGGTGGTCTTCTCAGAGGATT
ACGCGTTGTCGAAACAGTGCTTAGATACACTCGTGGAGTTTCTGGAGCGAAAAGATGATGGGCTTGTGATTGTTCCGGTTTACTAT
GGTGGCGTCACTGAATCAATGGTGAAGCAACAGACGGAGAGATTCGGTGTAGCCTTTACCCAACATCAGAATAACTACTCGTACGA
CCAGGTAGCCAAATGGAGAGACTGTCTGATTCAAACGGCCAGCTTACCAGGTCATGAATTAAATCTTCAACAAGAgtaagtccaaatctgat
caatatacacttttcattaagtttggaatcgttaaagtaatgccagtggggaggagactagttagccattttttttataactttttacgttacatacaatttaatgtttagttaaagagaactagttaatgaa
aaaattactgaaatataaatagtaacaaactagtatggattttgtttttgcgtagaaacttacaaattttgttagaaaacatgttatattgtgaaacaaataaaatggctaagatatcttataatatgaa
acagagctactaatagatgataaagtgaacaaattttttaatttgactaattgagctaaaagcgttaggtataacggcttactttttttttaattgtatttttgtgactagctgtatttatagagttttatatgtt
atggtgaccttttttttttatgaaggtaaaatttattcatcaaaaaatctgtgtacattagtgcatccctattttcactgtaaatttaactttttaagaaaaatattgaaactaatttaacatccctagaaaac
E
agaatcttttaaccttttatagccatcctttggtagaatcttttaagtaccttctagagaagaaaatattttttttattgtgaaaaagttgacctttgttttggaaaatttgtgcagAGACTCCGAATT
TGTAGAAAAGATTGTTGCTGATGTACGTGAAGTGCTGGATGCAACAGGTAAGATCGGAATCTACTCGAGGCTGCTGGAGATAGAAA
AATTGCTTTGCAAGCAATCTCTTAAATTCTATTACCTAGGGTTATGGGGTATGCCTGGCATAGGCAAGACCACCATTGCAGAAGCAG
CCTTTAAGCAGATGTCTAAAGACTTTGATGCTTCGTTCTTTGTGGAAGACTTCCACAAAGAATATCATAAGGGACGTCCGTACAAAC
TGCGGGAAGAGCATTTGAAGAAGGTTCCGAAAGGTGGATCCATTAGGGGACCAATCCTCTCATTCAAAGAGTTACGCGAGAAGAA
PL
AGTTCTTTTTGTTCTTGATGATGTGCGCAACCTGATGGATTTCGAGTCTTTCCTTGGAGGAATTGAAGGGGTTAGCCCTGGAAGTG
TAATAATCCTAACATCCAGAGATAAACAAGTTCTTCATCAGTGCCAGGTCGAGGATGTATTCGAAGTTCCGAGTCTGAACGAGGAAG
AAGCTGTACGGTTATTCGCCCGGACCGCGTTCCATAAAGAAGGGCCAAGTGATGCTAAATTAATGGACGTATCAAAGAAGGTTGCT
AGATATGCTGGTGGAAATCCTAAGGCTCTATGCTTCTATGGGAGAGAGCTGGAGAAGAAAAAGAAGCCGGAAGAAATGGAGGAGG
AGTTTGAGAAGATGAGGCAATGTCCCCCCCAAGAAATACTCAGTTTATTCAGAAGCAGCTATGATGCACTTAACGACAATGAGAGAA
GTATATTCTTGGACATTGCGTGTTTCTTTAATGGTGAACCGTGTGACGATGTAATGCGAATACTTGAAGGGTGTGGGTTCTTTCCAC
ACGTTGGGATTGACCGTCTTGCTGAGCGGTCTCTACTGACGATCTCAAAGGAAAAAAGAGTGGAGATGCAAGGTTTTATTCAAGAT
GCTGCCCGTGAATTCATCAACCAGACTTCGAGGCGTCGCAGACACTGGGAACCATCAAGAATCAGATTATTACTAGAAAATGATAAA
TCTAAGgtaggtgatacattctgttatctataacaatgtttatttaaattgtttaaggtcgatttattcggtttttcagGGGAATGAAGTTATTGAAGGGATTTTTCTTGACACA
ACAAAATTAACCTTTGATGTTAATCCTATGGCGTTTGAGAATATGTATAATCTTAGACTGTTGAAGATCTATAGTACACACTCCGAAACT
GCTCAAGAACTTCGTCTTACTAAGGAACTTCGCTCTTTGCCTTATGAGCTCAGGCTACTCCACTGGGAGAAGTATCCGTTGCAATC
M
GTTGCCTCAAGATTTTGACACTCGGCACCTTGTTGAACTCAATATGCCTTATAGTCAGCTTCAAAGTCTCTGTGTTGGAACTAAGgta
aaggttacattccgagagaaccgcaaattgtttttttttttagttaagctatttatgtgctttgttttgttttgcagAGCCTAGCCAAATTAAAGATGATAAATCTTAGCCACTCTC
AGAAACTACTTGAAGTTGACGAACTCGCGAAAGCGTGTAATCTTGAGAAAATAGATCTTCAAGGTTGTACAAGCTTGAAGAGCATCC
CACACACGGATCGGCTAAAGAATCTTCAATTTCTGAATCTATCTGGTTGCACGAGTATCAAACGTACGGAGGCTATAAAGAAGATAA
AAGGAATGAATCAAGAAGGCTGCTTAAGAGAAACTACATTTGAATCAATGGTGTTCGAATACTATGTTAAAGAATCTTCTTAAgcttccgtt
ctagggaggggggagggaaatgttagtgctagaaactcagatcagatgttattttgtttacttaatttttgttttagttttgaatttattaagcaacaaaaaatactttttacagcccagaaaaaaaaac
aaatgctaagaagaagatgagaagatgagcagcttaaagaagatggtaatatactattggatataactg
SA
UTR: the red region
Start Codon: TAA
Stop Codon:
Exon: the yellow region
Introns: the blue region
, 2. The coding sequence of the gene and the amino acid sequence of the protein
(http://arabidopsis.org/)
Coding sequence (CDS):
E
PL
M
SA
Conduct bioinformatics analysis on a gene of your interest in A. thaliana. The analysis
must contain:
1. The available full DNA sequence of the gene (https://bar.utoronto.ca/eplant/)
>AT5G45210 Chr5:18295437-18298642
atgaatatttacatttatgggacccacatgtttgtatacttatatcacaagcacagaaaatacaagaaaaaagtaagaaaatcaATGGCGACTTCAAAGGCGGATGAAGTAT
TTATCGACTTCAGTGGAATCGAAACGCGCAATTCTTTTGTGAGTCATCTCTCGGCCGCTTTCCGCCGCAGGAGTGTTTCCGTTTGC
CTTGGTGGAGACTGCACTGACGTGGTGACGCCGCGGAAAACCAATGAAGGGTGTAAAGTCTTTGTGGTGGTCTTCTCAGAGGATT
ACGCGTTGTCGAAACAGTGCTTAGATACACTCGTGGAGTTTCTGGAGCGAAAAGATGATGGGCTTGTGATTGTTCCGGTTTACTAT
GGTGGCGTCACTGAATCAATGGTGAAGCAACAGACGGAGAGATTCGGTGTAGCCTTTACCCAACATCAGAATAACTACTCGTACGA
CCAGGTAGCCAAATGGAGAGACTGTCTGATTCAAACGGCCAGCTTACCAGGTCATGAATTAAATCTTCAACAAGAgtaagtccaaatctgat
caatatacacttttcattaagtttggaatcgttaaagtaatgccagtggggaggagactagttagccattttttttataactttttacgttacatacaatttaatgtttagttaaagagaactagttaatgaa
aaaattactgaaatataaatagtaacaaactagtatggattttgtttttgcgtagaaacttacaaattttgttagaaaacatgttatattgtgaaacaaataaaatggctaagatatcttataatatgaa
acagagctactaatagatgataaagtgaacaaattttttaatttgactaattgagctaaaagcgttaggtataacggcttactttttttttaattgtatttttgtgactagctgtatttatagagttttatatgtt
atggtgaccttttttttttatgaaggtaaaatttattcatcaaaaaatctgtgtacattagtgcatccctattttcactgtaaatttaactttttaagaaaaatattgaaactaatttaacatccctagaaaac
E
agaatcttttaaccttttatagccatcctttggtagaatcttttaagtaccttctagagaagaaaatattttttttattgtgaaaaagttgacctttgttttggaaaatttgtgcagAGACTCCGAATT
TGTAGAAAAGATTGTTGCTGATGTACGTGAAGTGCTGGATGCAACAGGTAAGATCGGAATCTACTCGAGGCTGCTGGAGATAGAAA
AATTGCTTTGCAAGCAATCTCTTAAATTCTATTACCTAGGGTTATGGGGTATGCCTGGCATAGGCAAGACCACCATTGCAGAAGCAG
CCTTTAAGCAGATGTCTAAAGACTTTGATGCTTCGTTCTTTGTGGAAGACTTCCACAAAGAATATCATAAGGGACGTCCGTACAAAC
TGCGGGAAGAGCATTTGAAGAAGGTTCCGAAAGGTGGATCCATTAGGGGACCAATCCTCTCATTCAAAGAGTTACGCGAGAAGAA
PL
AGTTCTTTTTGTTCTTGATGATGTGCGCAACCTGATGGATTTCGAGTCTTTCCTTGGAGGAATTGAAGGGGTTAGCCCTGGAAGTG
TAATAATCCTAACATCCAGAGATAAACAAGTTCTTCATCAGTGCCAGGTCGAGGATGTATTCGAAGTTCCGAGTCTGAACGAGGAAG
AAGCTGTACGGTTATTCGCCCGGACCGCGTTCCATAAAGAAGGGCCAAGTGATGCTAAATTAATGGACGTATCAAAGAAGGTTGCT
AGATATGCTGGTGGAAATCCTAAGGCTCTATGCTTCTATGGGAGAGAGCTGGAGAAGAAAAAGAAGCCGGAAGAAATGGAGGAGG
AGTTTGAGAAGATGAGGCAATGTCCCCCCCAAGAAATACTCAGTTTATTCAGAAGCAGCTATGATGCACTTAACGACAATGAGAGAA
GTATATTCTTGGACATTGCGTGTTTCTTTAATGGTGAACCGTGTGACGATGTAATGCGAATACTTGAAGGGTGTGGGTTCTTTCCAC
ACGTTGGGATTGACCGTCTTGCTGAGCGGTCTCTACTGACGATCTCAAAGGAAAAAAGAGTGGAGATGCAAGGTTTTATTCAAGAT
GCTGCCCGTGAATTCATCAACCAGACTTCGAGGCGTCGCAGACACTGGGAACCATCAAGAATCAGATTATTACTAGAAAATGATAAA
TCTAAGgtaggtgatacattctgttatctataacaatgtttatttaaattgtttaaggtcgatttattcggtttttcagGGGAATGAAGTTATTGAAGGGATTTTTCTTGACACA
ACAAAATTAACCTTTGATGTTAATCCTATGGCGTTTGAGAATATGTATAATCTTAGACTGTTGAAGATCTATAGTACACACTCCGAAACT
GCTCAAGAACTTCGTCTTACTAAGGAACTTCGCTCTTTGCCTTATGAGCTCAGGCTACTCCACTGGGAGAAGTATCCGTTGCAATC
M
GTTGCCTCAAGATTTTGACACTCGGCACCTTGTTGAACTCAATATGCCTTATAGTCAGCTTCAAAGTCTCTGTGTTGGAACTAAGgta
aaggttacattccgagagaaccgcaaattgtttttttttttagttaagctatttatgtgctttgttttgttttgcagAGCCTAGCCAAATTAAAGATGATAAATCTTAGCCACTCTC
AGAAACTACTTGAAGTTGACGAACTCGCGAAAGCGTGTAATCTTGAGAAAATAGATCTTCAAGGTTGTACAAGCTTGAAGAGCATCC
CACACACGGATCGGCTAAAGAATCTTCAATTTCTGAATCTATCTGGTTGCACGAGTATCAAACGTACGGAGGCTATAAAGAAGATAA
AAGGAATGAATCAAGAAGGCTGCTTAAGAGAAACTACATTTGAATCAATGGTGTTCGAATACTATGTTAAAGAATCTTCTTAAgcttccgtt
ctagggaggggggagggaaatgttagtgctagaaactcagatcagatgttattttgtttacttaatttttgttttagttttgaatttattaagcaacaaaaaatactttttacagcccagaaaaaaaaac
aaatgctaagaagaagatgagaagatgagcagcttaaagaagatggtaatatactattggatataactg
SA
UTR: the red region
Start Codon: TAA
Stop Codon:
Exon: the yellow region
Introns: the blue region
, 2. The coding sequence of the gene and the amino acid sequence of the protein
(http://arabidopsis.org/)
Coding sequence (CDS):
E
PL
M
SA
