lOMoARcPSD|59658805
Enzyme Catalysis
Biochemistry (University of Oxford)
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Enzyme Catalysis
Acid Base Catalysis
- General Acid Base catalysis / Specific Acid Base + Concerted General Acid and Base
- Keto-Enol tautomerisation
- pKa and pH
- Amino Acids w/acidic, basic side chain (K, R, D, E, H)
- RNase
- Mutarotation - glucose
- alpha-Pyridone
1. General acid catalysis : process in which partial proton transfer from a Bronsted acid lowers the free energy of a reaction's TS
2. General base catalysis : rate increased by partial proton abstraction by a Bronsted base
3. Concerted general acid-base catalysed reaction : both reactions simultaneously occurring
- acid/base revert back to their original forms after catalysis
Keto-enol tautomerisation
(a) Uncatalysed
(b) General acid catalysis : in the enzyme active site, the acid donates a proton to help
stabilisation of the negative oxygen
(c) General base catalysis : the base pulls the hydrogen away from the carbon,
neutralising the positive charge of the proton
Reduces the carbanion character of the TS, catalysing the reaction
RNase A
Function: hydrolyse RNA to its component nucleotides - reaction peaks at pH 6
Mechanism: isolation of 2',3'-cyclic nucleotides from RNase
1. His 12, acting as a general base, abstracts a proton from RNA 2'-OH group.
This promotes a nucleophilic attack on the adjacent Phosphorous.
His 119 acts as a general acid, promoting bond scission by protonating the leaving group.
2. The 2',3'-cyclic intermediate is hydrolysed through the reverse of the first step, where water replaces the leaving group.
Therefore, His 12 acts as a general acid and His 119 as a general base to yield they hydrolysed RNA and have enzyme back to its original state.
The pH dependence of V'max/K'm in the RNase A
- ANALYSIS: catalytic participation of AA groups with pK'a of 5.4 and 6.4
Downloaded
Enzymes Page 1 by olinder seth ()
Enzyme Catalysis
Biochemistry (University of Oxford)
Scan to open on Studocu
Studocu is not sponsored or endorsed by any college or university
Downloaded by olinder seth ()
, lOMoARcPSD|59658805
Enzyme Catalysis
Acid Base Catalysis
- General Acid Base catalysis / Specific Acid Base + Concerted General Acid and Base
- Keto-Enol tautomerisation
- pKa and pH
- Amino Acids w/acidic, basic side chain (K, R, D, E, H)
- RNase
- Mutarotation - glucose
- alpha-Pyridone
1. General acid catalysis : process in which partial proton transfer from a Bronsted acid lowers the free energy of a reaction's TS
2. General base catalysis : rate increased by partial proton abstraction by a Bronsted base
3. Concerted general acid-base catalysed reaction : both reactions simultaneously occurring
- acid/base revert back to their original forms after catalysis
Keto-enol tautomerisation
(a) Uncatalysed
(b) General acid catalysis : in the enzyme active site, the acid donates a proton to help
stabilisation of the negative oxygen
(c) General base catalysis : the base pulls the hydrogen away from the carbon,
neutralising the positive charge of the proton
Reduces the carbanion character of the TS, catalysing the reaction
RNase A
Function: hydrolyse RNA to its component nucleotides - reaction peaks at pH 6
Mechanism: isolation of 2',3'-cyclic nucleotides from RNase
1. His 12, acting as a general base, abstracts a proton from RNA 2'-OH group.
This promotes a nucleophilic attack on the adjacent Phosphorous.
His 119 acts as a general acid, promoting bond scission by protonating the leaving group.
2. The 2',3'-cyclic intermediate is hydrolysed through the reverse of the first step, where water replaces the leaving group.
Therefore, His 12 acts as a general acid and His 119 as a general base to yield they hydrolysed RNA and have enzyme back to its original state.
The pH dependence of V'max/K'm in the RNase A
- ANALYSIS: catalytic participation of AA groups with pK'a of 5.4 and 6.4
Downloaded
Enzymes Page 1 by olinder seth ()
